Poster Session Presenters and Titles
3:00 - 5:00 PM Poster Session I
Multi-purpose Room, Shriver Center
Jian-Li Xue, Xiu-Feng Wan, and Xiao-Wen Cheng, “A Hypothesis: Evolution of Ascovirus from Baculovirus”
Partho Sarothi Ray and Paul L. Fox, “Phylogenetic Analysis of the Glutamyl Prolyl-tRNA Synthetase WHEP Domains as a Tool For Elucidating Metazoan Origin and Evolution”
Jens Lichtenberg, “Design Pattern for Protein Identification”
Dazhang Gu and Lonnie Welch, “The Classification of Hydroxyproline‚ Rich Glycoproteins Using Machine Learning”
Liwen Wang, Hua Xu, Chen Ren, Shujun Liu, Guido Marcucci, and Michael A. Freitas, “Enrichment and Characterization of Histone H1 Phosphorylation Isoforms in Chemoprevention of Acute Myeloid Leukemia”
Hua Xu and Michael A. Freitas, “MassMatrix: A Database Search Algorithm for High Mass Accuracy Tandem Mass Spectrometry Data Analysis”
Shubham Vyas and Christopher M. Hadad, “Ion Permeation and Binding in Biomolecular Devices via Molecular Dynamics”
Savas Kaya, J. E. Fonseca, and R. F. Rakowski, “Ion Permeation and Binding in Biomolecular Devices via Molecular Dynamics”
Toby T. Sanan, and Christopher M. Hadad, “Computational Modeling of the Binding of Anthracycline Derivatives to Human DNA Topoisomerase I”
Shannon I. Steinfadt, “SWAMP: Smith-Waterman on an Associative Multiprocessor”
William Ray, Abhilash Mohan, and Jeffrey Bartlett, “Using Flow-Visualization for Studying Sub-Molecular Motions”
Douglas W. Raiford, “Gene Expression Prediction Using Soft Computing Techniques”
Jeremy Beck, and C. M. Hadad, “Model Reaction Pathways for Organophosphinate (OP) Hydrolysis by ACHE and Related Catalytic Serine Mutants to Aid in Design of a Novel Bioscavenger”
Helaine Alessio, Michelle L. Simonsen, Natalie B. Schweitzer, and Ann E. Hagerman, “Access to Lifelong Exercise Improves Phenotypic and Genetic Markers of Health and Longevity in Sprague-Dawley Rats”
Jason M. Bechtel, and Alexei Fedorov, “The Alternative Splicing Mutation Database (ASMD): a Hub for Investigation into the Sequence-based Mediators of Alternative Splicing”
Eric Bracey, “Using Geometric Constraints Derived from Aggregate Data for Protein Structure Simulation”
Janet Doolittle, Aguda, B., and Doseff, A.I, “Mathematical Modeling of PKCdelta-mediated Activation of Caspase-3 during Cell Death”
Shuhua Du, Susan Evans, Dazhang Gu, and Lonnie Welch, “Discovering Conserved Domain and 3 D-structure for Ovca1 Proteins”
Bhakti Dwivedi, “Sequence Parameters and Phylogenetic accuracy-A simulation Study”
Kurtis Eisermann, Sunpreet Tandon, Anton Bazarov, Gail Fraizer, and Helen Piontkivska, “Evolutionary Conservation of Transcription Factor Binding Sites in Promoters of Genes Important in Prostate Cancer”
Weiguo Fan, Johnnie Baker and Chun-che Tsai, “Chemical Molecular Similarity Analysis and its Applications”
Junhai Guo, “Statistical Significance and Biological Relevance of Microarray Clustering Results”
Pooja Majmudar, Dazhang Gu, Lonnie Welch and Susan C. Evans, "Discovering P53 Motif Binding Sites in Cancer Related Genes"
3:50 pm – 5:00 pm and 6:30 – 7:30 pm Poster Session II
Multi-purpose Room A, Shriver Center
Allan M. Showalter, Brian Keppler, Jason Yerardi, Tom Conley, Lonnie R. Welch, and Dazhang Gu, “A Bioinformatics Approach to the Identification, Classification, and Analysis of Plant Hydroxyproline-Rich Glycoproteins”
Julia Marcela Hernandez, Shuiming Qian, Lianbo Yu, and Kathleen Boris-Lawrie, “Bioinformatic analysis of RNA HELICASE A as a Central Node of a POST-TRANCRIPTIONAL Operon /Regulon that Modulates Translation of a Subset of Human mRNAs”
Jason J. Lavinder and Thomas J. Magliery, “Combinatorial Biophysics: Library Approaches to the 'Inverse' Protein Folding Problem Using the Small Well-behaved Model Protein Rop”
Huameng Li, Malali Gowda, Venu RC, Richard Pratt, Rod Wing, Guo-Liang Wang, “Toward a Complete Transcriptome Analysis of the Zea Mays Genome”
Jens Lichtenberg, Shigeru Okada, Lucila Sackmann-Sala, Sudha Sankaran, John Kopchick and Lonnie Welch, “Identification of Post-Translational Modifications in Mass-Spectrometry Data”
Philip E. Pfeiffer and Sudhindra R. Gadagkar, “Stationarity of the Substitution Pattern and other Sequence Parameters: a Quantification of Their Effects on the Accuracy of Phylogenetic Inference”
Angela X. Qu, Ranga C. Gudivada, Anil G Jegga, Eric K. Neumann, Bruce J Aronow, “Drug Discovery and Novel Therapeutics Agent Applications using Semantic Web-based Disease Model Representation and Reasoning”
Kevin Riehle, “SCUBA: A Computational Tool to Study the Evolution of Gene Structure in the Genome”
Mateen Rizki, Victor T. Chan, Claude C. Grigsby, John J. Schlager and Louis A. Tamburino, “Evolving Ordered-Nearest Neighbor Classifiers for Marker Gene Selection and Determination of Chemical Exposure Dosage”
Maureen Sartor, “Systematic Comparisons Reveal that Logistic Regression Provides a Simple Yet Powerful Approach to Identifying Enriched Biological Groups in Gene Expression Data”
Yingjia Shen, Yuansheng, Lin Liu, Chun Liang and Q. Quinn Li, “PlantPolyA: a Database of Plant mRNA Polyadenylation Sites”
Sinu Paul and Helen Piontkivska, “Sequence Polymorphism of Protease and Reverse Transcriptase Genes of Human Immunodeficiency Virus (HIV) and Evolution of Drug Resistance”
M. Henry H. Stevens, “Introducing the R Function ``Adonis'' - a Nonparametric, Variance Partitioning, Hypothesis Testing Method for Wide Matrices”
Brandon Sullivan, Venuka Durani and Thomas J. Magliery, “Consensus and Correlation in Protein Design of Triosephosphate Isomerase from Sequence Statistics”
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yusu Wang, “Enhanced Partial Order Curve Comparison Over Multiple Protein Folding Trajectories”
Louis A.Tamburino, Victor T. Chan, Claude C. Grigsby, John J. Schlager and Mateen M. Rizki, “Gene Transcript Selection Techniques and Bayesian Dosage Prediction Models for Identifying Key Biomarker Genes”
Tracey Weiler, Q Du, M Ma, K Dasuri, O Krokhin, H El-Gabalawy, and JA Wilkins, “Identification and Characterization of a Novel Protein, c19orf10”
Yee Ling Wu, Stephanie L. Savelli, Yan Yang, Bi Zhou, Brad H. Rovin, Daniel H. Birmingham, Haikady N. Nagaraja, Lee A. Hebert and C. Yung Yu, “Sensitive and Specific Real-Time PCR Assays to Accurately Determine Gene Copy Number Variations (GCNVs) of Human Complement C4A, C4B, C4-Long, C4-Short and RCCX Modules: Elucidation of C4 GCNVs in 50 Consanguineous Subjects with Defined HLA Genotypes”
Hua Xu and Michael A. Freitas, “Automated Direct Identification of Disulfide Bonds by use of MassMatrix’s Probabilistic Scoring of Tandem Mass Spectra”
Lanhao Yang, Shengjiang Tu, Chen Ren, Chun-Lin Liao, Ming-Daw Tsai, Michael A. Freitas, “Unambiguous Determination of Isobaric Modifications by LC-MS and High Mass Accuracy”
Cristina Burcica and Carla Purdy, “A Modular Approach to Modeling a Protein Switch with Stochastic Parameters”
Wenting Yi, En Yu and Dr. Valerie V. Cross, “Concept Lattices with Approximation Operators for Analyzing Gene Ontology Annotations”
Lihua Nie, Christina Keventzidis and Thomas J. Magliery, “A Synthetic Approach to Scanning Mutagenesis with Photoaffinity Labels for Identifying Protein-protein Interactions”
Rajesh Krishnan, “Comparison of Modeling Methodologies in Systems Biology”
Xiu-Feng Wan, Mufit Ozden, Guohui Lin and Michael Emch, “Ubiquitous Reassortments in Influenza A Viruses”
John P. Pestian, Christopher Brew, Pawel Matykiewicz, DJ Hovermale, Neil Johnson, K. Bretonnel Cohen, Wlodzislaw Duch, “Multi-label Classification of Clinical Free Text: Using a Shared Task Model to Develop Resources and Refine Algorithms”
Fadi Michael, "Virtual Microscopy: A Tool to Improving Pediatric Cancer Research"
Dean Zeller, "Nifty Bioinformatics Assignments"
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