Presenter

Title

Y. Shen (Miami University), G. Ji, R. Han, J. Li (Xiamen University, Fujian, P. R. China) and Q.Q. Li (Miami University)

Predictive modeling of plant messenger RNA polyadenylation sites

M. Askenazi, J. Sutton (Thermo Electron), C. Ptak (Advion Biosciences) and L. Bonilla (Thermo Electron)

Split SIEVE: Informatic Support for Differential Split LC-FTMS Experiments

D.R. Roberts, V. Nadella, S.E. Wyatt (Ohio University)

Bioinformatic Approach to Identification and Characterization of GPS3-like Genes

Kevin P. Riehle and Sudhindra R. Gadagkar (University of Dayton)

Understanding the Evolution of the Disease Gene Glucose-6-Phosphate Dehudrogenase (G6PD), With Emphasis On The Exon-Intron Structure

P. Anderson, L. Mitchell, D. Sweeney, T. Christian, M. Raymer, and G. Alter (Wright State University;)

Protein Structure Probing through Chemical Modification

K. Soo, N. Lee, H. Ko and D. Chiang (Sage-N Research, Inc.)

A novel approach to determine the significance of SEQUEST peptide results

J. Chen, A.G. Jegga and B.J. Aronow (Cincinnati Childrens Hospital Medical Center)

Biomedical Concept Based Indexing of Clinical Synopsis and Knowledge
Extraction

K. Brown, J. Reese, H. Piontkivska and G. Fraizer (Kent State University)

Evidence of common pathways of coordinately regulated genes in prostate
cancer

K. Ecker, J. Zhang, J. Bascom, T. Conley, J. Goble, L. Welch and S. Wyatt (Ohio University)

Methods for Motif Discovery in DNA

S. Gowrisankar, A.G. Jegga and B.J. Aronow (Cincinnati Children's Hospital Medical Center)

Analysis of implications of single nucleotide polymorphisms on non-coding
regions through Bioinformatics approaches

Maureen A Sartor (University of Cincinnati) and Mario Medvedovic (Cincinnati Children’s Hospital Medical Center)

Intensity-based hierarchical Bayes method improves testing for
differentially expressed genes in microarrays

X. Liu (Cincinnati Children’s Hospital Medical Center) and M. Medvedovic (University of Cincinnati Medical Center)

Characterizing transcriptional modules by joint modeling of jxpression and regulatory Information

J. Lichtenberg, L. Welch, T. Conley,
S. Okada, S. Sankaran and J.J. Kopchick (Ohio University)

Analysis of Mass Spectrometry data based on different algorithms in a generic framework

Yuheng Li, Nicholas Chia, Mario Lauria and Ralf Bundschuh (The Ohio State University)

Improving the Detection of Weak Homologs in Sequences Database Searches

Weisong Gu (Ohio Supercomputer Center-Springfield)

Identification of KLF4 target genes Wnt/beta-catenin pathway

J.C. Withers and S.E. Wyatt (Ohio University)

The use of bioinformatic resources to compliment studies of plant gravitropism.

R. Krishnan and C. Purdy
(University of Cincinnati )

Design, Modeling and Control of the TNF alpha-Mediated NF-kB Signal
Transduction Pathway

S.I. Steinfadt (Kent State University)

Adapting a Local Sequence Alignment Algorithm for an Associative Model of
Parallel Computation

S. Ramachandran (Wright State University)

Repetitive elements as time-series genomic data

H.B. Smith (Ohio Supercomputer Center)

A SAGE Analysis Coprocessor For Fuzzy Matching Using Reconfigurable
Computing on the Cray XD1

B. Miles and Y. Cheng (University of Cincinnati)

Cycles and Steady States in Boolean Networks

J. Zhou (The Ohio State University)

E. Gosney (Ohio University)

Liver eNOS Expression in Ames dwarf and GHR/BP -/- Long-Lived Mice and the Effect of Caloric Restriction

A.D. Johnson (The Ohio State University)

Systems Biology integration of large mouse SNP datasets and physiological
biomarker data to discover cardiovascular disease candidate genes

W. Li  (University of Toledo), J.M Frazier (Air Force Research Laboratory, WPAFB, OH)

A General Bio-Molecular Network Model and the Solution of the Network
Chemical Master Equation

S. Edwards (Sound Health Research Institute, Inc.)

Articulation Pattern Analysis Holds Potential to Mathematically Model BioAcoustic Biology Templates of Human Biochemistry, Structure and Disease Process

W. Fan, B. Lin, X. Lin, J. Baker, C.-C Tsai (Kent State University, Kent, OH)

Structure-Activity Relationship (SAR) Analysis using Structure-Activity
Maps (SAMs)

A. Jega and M. Zender (University of Cincinnati)

GATACA: A Visualization System for Exploring Associations of Genetic,
Anatomical and Disease Concepts

D. Sweeney (Wright State University)

Automation of Data Extraction in Chemical Reactivity Analysis Experiments

M. Agellotti (Miami University, Oxford,
OH), S. B Bhuiyan (University of Missouri) and X.F Wan (Miami University, Oxford, OH)

CodonO: a Webserver for Synonymous Codon Usage Bias Orderliness Comparison across Unicellular Genomes

S.G. Kang, J.E. Price, P.C. Lin and J.C. Jang (The Ohio State University)

The role of a bZIP transcription factor in sugar signaling in Arabidopsis thaliana

Anil Jegga, Mike Zender and Ralph Brueggemann (University of Cincinnati)

Bioinformatics Resource Center: A Collaborative MetaTool for Organizing Describing and Annotating Bioinformatics Tools and Databases

P.K. Biswas and V. Gogonea (Cleveland State University)

Polarizable Molecular Mechanic atoms and their influence in the interaction energy and binding affinity of ligands and substrates.

C. Frankenfield, S. Owens, R. C Moore (Miami University)

Does selection or drift dominate in the establishment of recent gene duplicates in the Arabidopsis thaliana genome?

D. X. Zhu, R. J Goeke, D. L. Baker, J. H. Hamburg, and D. E. Booth (Kent State University)

An Investigation of Gene Expression (Microarray) Analysis By Neural Networks

K. Carter and C.Liang (Miami University, Oxford, OH)

JTraceMiner: a Java-based data visualization and mining tool for DNA sequencer trace processing

F. Altiparmak, O. Ozturk ,S. Erdal, H. Ferhatosmanoglu (The Ohio State University) and D. C. Trost (Pfizer Inc., Global Research and Development)

Information Mining over Heterogeneous Microarray and Clinical Data

Aakash S Dalwani (Ohio Supercomputer Center)

S. Wan (The Ohio State University)

An Importance Sampling Procedure for Obtaining Confidence Intervals of Disease Loci with General Pedigree Data